FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005284553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48352502
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGTCATGTCCGCCTCTTC1048030.21674783240792794No Hit
GGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTT958080.19814486538876522No Hit
GGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTC904710.18710717389557213No Hit
GTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTC885560.18314667563635073No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT848180.17541594848597492No Hit
GTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAG798030.1650441997810165No Hit
GTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGC754050.15594849672929026No Hit
GTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGG690640.14283438734980042No Hit
GTCTTGCTGTGTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGT673270.1392420189548826No Hit
GGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCT636840.1317077656084891No Hit
CTCGTCTTGCTGTGTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACT581260.12021301400287415No Hit
GTTAAAAGTAAGAGACAGCTGAACCCTCGTGGAGCCATTCATACAGGTCC529450.10949795317727302No Hit
GGGTCTTCTCGTCTTGCTGTGTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAGAGAC500410.10349205921133099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)