FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005284609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39240193
Sequences flagged as poor quality0
Sequence length35-76
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA1243490.31689191742762324No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1188250.30281451469925236No Hit
CAAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTT796720.20303671798963885No Hit
GTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGT558040.1422113290829125No Hit
GCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGGATT497900.1268852067062973No Hit
GTGGGAGGCGGCCCATGTGGCGGAGCAGTGGAGAGCCTACCTGGAGGGCA446500.11378639243695869No Hit
AAAAAGGGCTCCAAGAAAGCCGTCACCAAAGCCCAGAAGAAAGACGGCAAGAAGCGCAAGCGCAGCCGCAAAG427220.10887306288223403No Hit
CTGGCATCGTGATGGACTCCGGTGACGGGGTCACCCACACTGTGCCCATC414670.10567481153826129No Hit
GAGCTGCCTGACGGCCAGGTCATCACCATTGGCAATGAGCGGTTCCGCTG408030.10398266899451793No Hit
TGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTG405130.10324363083535291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)