FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005284664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52816362
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGTCATGTCCGCCTCTTC1192600.22580123939623103No Hit
CTCGTCTTGCTGTGTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACT1179420.22330580057748012No Hit
GTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGCTGTGT1111180.21038556195900052No Hit
GGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCT976430.18487263473391066No Hit
GTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGC874160.16550931698021912No Hit
GTCTTGCTGTGTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGT846950.16035750436578725No Hit
GGGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTC755040.14295569997797272No Hit
GTGGGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGT733210.1388225110998747No Hit
GTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAG636460.12050432401989368No Hit
GGGTCTTCTCGTCTTGCTGTGTCATGTCCGCCTCTTCACGGGCAGGTCAATTTCACTGGTTAAAAGTAAGAGAC592790.11223605291102784No Hit
GGTTTGTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTT587220.11118145547396846No Hit
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT580920.10998864329201621No Hit
GGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTG580040.10982202825707685No Hit
GTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGG546880.10354367080413453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)