FastQCFastQC Report
Wed 11 May 2022
EGAF00005284766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences355627449
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCTGA9216972825.917495474315878No Hit
CCTCTAAC9051657925.452641311722818No Hit
GACAGGCT8263166823.23545840804881No Hit
AGGGACTG8121625722.837454540805144No Hit
NTATCTGA6111100.17183994141014688No Hit
TTATCTAA6063530.17050230563051955No Hit
NCTCTAAC5931890.16680067910056065No Hit
NACAGGCT5490150.15437925321675605No Hit
NGGGACTG5391060.15159291036615116No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)