FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005284776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364364648
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGATGC9731693726.708666039412254No Hit
CTGCGGTA9069716924.891868488844178No Hit
GACACAAT8831072124.23690703385692No Hit
ACATTCCG7656489121.013260046018516No Hit
NGTGATGC13861380.3804260395756067No Hit
NTGCGGTA12946230.3553097170941787No Hit
NACACAAT12567880.3449258886389No Hit
NCATTCCG10857380.2979811586990184No Hit
ACATTCCA5794540.15903134488502849No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)