FastQCFastQC Report
Wed 11 May 2022
EGAF00005284791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences332436666
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT8769719126.380119875224594No Hit
CAGCTTAC8641480925.994367600834984No Hit
ATTGGACG8088861424.332037429349025No Hit
GGCAAGGA6766344320.35378462133897No Hit
NCATCCTT13169520.39615124764847687No Hit
NAGCTTAC12975710.390321264983448No Hit
NTTGGACG12198410.366939367632811No Hit
NGCAAGGA10319240.31041220946428333No Hit
TCATCCTA5159520.15520309664036877No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)