FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005284809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences345304838
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT10965920431.757216213692317No Hit
GGGACTAC8581501224.851957620124626No Hit
TCATGCGA8489085324.58432192600788No Hit
CATCAGTG5307296615.369887751181754No Hit
NTCGTACT19346840.5602829115298986No Hit
NGGACTAC15085780.43688296078840344No Hit
NCATGCGA15005590.43456066491602413No Hit
NATCAGTG9353430.2708745714127527No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)