FastQCFastQC Report
Wed 11 May 2022
EGAF00005284817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences348088494
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACACCTAA9793096328.133927058215257No Hit
GACAAACC9069109826.054034983414304No Hit
CGTTTGGG8737563425.10155765160109No Hit
TTGGGCTT6500071318.67361723251904No Hit
CGTTTGGA7920650.22754702141921418No Hit
NCACCTAA4017790.11542438400736106No Hit
NACAAACC3780580.10860973761459636No Hit
NGTTTGGG3641630.10461793661010813No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)