FastQCFastQC Report
Wed 11 May 2022
EGAF00005284819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences345887084
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGGAA11412165132.99390358270794No Hit
TCACACTC11208968332.40643787670314No Hit
CAGTCTGG8642027124.98511074787632No Hit
GGCATACT207464035.998027668474606No Hit
NTTGGGAA16494880.4768862661549976No Hit
NCACACTC15759050.4556125605430239No Hit
NAGTCTGG12453610.36004842551449534No Hit
ATTGGAAA10608810.30671310062563656No Hit
TCACACTA5570820.16105891944782766No Hit
CAGTCTGA5338140.15433186860484216No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)