FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005284824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences340253158
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAGGCCATCACTAAAGGCACCGAGCACTTTCTTGCCATGAGCCTTCAC4184610.12298519210217No Hit
GTCAGCGCGTCGGCCACCTTCTTGCCGTGGCCCTTAACCTGGGCAGAGCC4002760.11764064214798559No Hit
GGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCACGTGCGCCACG3517100.1033671522895902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)