FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005284853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences316250868
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTCCGT7799895924.663634757201677No Hit
AGTCTGTA7787691124.625042610159728No Hit
TTAGGACC7502157523.722172044757833No Hit
CAGAATAG7423689823.474053516273667No Hit
NGTCTGTA15043980.4756976667017401No Hit
NCCTCCGT14879150.47048566519665647No Hit
NTAGGACC14445190.4567636475230164No Hit
NAGAATAG14366890.45428776499041895No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)