FastQCFastQC Report
Wed 11 May 2022
EGAF00005284868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences358716975
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGATGGG9217004225.69436308387692No Hit
AACGACAC8613212124.011163954535466No Hit
CGTCCTCT8567529523.88381397339783No Hit
GCATGATA8346424423.267436396061267No Hit
NTGATGGG14345830.399920578054607No Hit
NACGACAC13372270.37278051868050016No Hit
NCATGATA12970460.3615792087898823No Hit
NGTCCTCT12924880.3603085691721168No Hit
TTGATGGA9447450.26336779852695846No Hit
CGTCCTCA4007820.1117265220024784No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)