FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005284872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences298904058
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGTAA9321509231.18562277933343No Hit
AGCTTCTC8491270328.40801278114464No Hit
GTACAACG5950642819.90820345436729No Hit
CCTGCGGT5387441618.023982799189696No Hit
NAGAGTAA9586440.3207196337227379No Hit
NGCTTCTC8511830.28476796390633147No Hit
NCTGCGGT5489730.1836619427896827No Hit
AGATTCTC5282940.17674366936831618No Hit
NTACAACG5017300.1678565367620402No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)