FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005284882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences355347386
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGATCA9948960927.997844621825923No Hit
AAATCGTC8803099524.773221492052848No Hit
CTTCGAAT8713487424.521039814262206No Hit
GCGATCGG7307972920.565714531526062No Hit
NGCGATCA9462520.2662892812162124No Hit
NAATCGTC8438520.23747240960427385No Hit
NTTCGAAT8320350.23414693136366563No Hit
NCGATCGG6940210.19530775442372328No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)