FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005284907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences362818972
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCTCGGTGGTCGC53287911.468718951113725Illumina Single End PCR Primer 1 (100% over 16bp)
TTCCCTGGAAACGCAG4811120.1326038705605505No Hit
TATCGATCTTCAGGTT4484470.12360075812132558No Hit
TGCGACGACAATCGAA4357130.1200910188345939No Hit
GAACGTTTGACGCGAA4072670.11225074525595648No Hit
CAGGCTTCTCGAGGTA4027110.1109950226086854No Hit
GTTTCCCGAATGTGGG3858900.10635882624131354No Hit
GAAAGTAACTGTCACA3857450.10631886140728054No Hit
GCGGTTCGAGTTAGGG3724950.10266690243530044No Hit
AAATGCGCTGGTATGG3679570.10141614093984039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)