FastQCFastQC Report
Wed 11 May 2022
EGAF00005284912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences354987517
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAGAAC9945973228.017811116439905No Hit
TGCTCTGT9442164426.598581493219097No Hit
AATCACTA8687931024.473905655674084No Hit
GTAGTGCG6596655318.58278103903017No Hit
NCGAGAAC12233870.34462817462958845No Hit
NGCTCTGT11615510.32720897056219583No Hit
NATCACTA10790430.3039664631362235No Hit
NTAGTGCG8145500.22945877277143803No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)