FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005284991

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005284991
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences325516460
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAGCC10604828932.578472068662826No Hit
GCCTTTAT8653813526.584872236568312No Hit
AAAGCATA6937118321.311113729855627No Hit
TGTAGCGG5158975815.848586581458893No Hit
NTGCAGCC13342430.40988495635520245No Hit
NCCTTTAT11045750.33932999885781506No Hit
NAAGCATA8891130.27313918319214947No Hit
NGTAGCGG6540220.20091825771268215No Hit
TGTAGCGA6042270.1856210281962393No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)