FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005285021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005285021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences351956290
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACGCC11237182031.9277771680114No Hit
GTCTTTGA9460199926.878905616376397No Hit
CATGGCAG7267182720.647969382788983No Hit
TCGCAATT6491536418.444155096645666No Hit
NGAACGCC7585300.21551823949502363No Hit
NTCTTTGA6388790.18152225664158467No Hit
NATGGCAG4869480.13835468034965365No Hit
NCGCAATT4329000.12299822799018593No Hit
CATGGCAA3661690.10403820315301085No Hit
TCGCAATA3659190.10396717160531498No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)