FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005285024

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005285024
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364364648
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCTCGGTGGTCGC27532860.755640267274228Illumina Single End PCR Primer 1 (100% over 16bp)
CGAGGACCTCGATTCA5835720.16016153136788397No Hit
TTGCGTCACTTTCTTG5559540.15258176199355103No Hit
CAGGCCATGAAGGTGC4802580.13180696937426267No Hit
CGACCTTTGGAACCTT4035440.11075278631312224No Hit
AATGGGTCTAACGCAG3877480.10641756880870616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)