FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005285041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005285041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364446362
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACAACTA9596321126.331230327935064No Hit
TCATCAAG9218486925.294495599876505No Hit
AGGCTGGT8372623222.973540342268528No Hit
GTTGGTCC8199687422.49902387556279No Hit
NACAACTA15572660.42729634930475724No Hit
NCATCAAG15240550.41818362286190136No Hit
NGGCTGGT13792630.37845431970589954No Hit
NTTGGTCC13425180.36837190324319935No Hit
CACAACAA4176730.11460479333855994No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)