FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005285864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005285864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences315964863
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC9075882328.724340465667535No Hit
GGTCAATA8803533827.862382280146132No Hit
ATCTTTAG8203536225.963444549212422No Hit
TCAGCCGT4880176615.44531424685662No Hit
ATCTTTAA5686490.1799722268485278No Hit
CAGAGGCA4602120.1456529044496951No Hit
TCAGCCGA3250190.10286555185726458No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)