FastQCFastQC Report
Mon 6 May 2024
EGAF00005285865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005285865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475330025
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length10
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTCTAGAG46786379598.42925344343648No Hit
CCTTCTCGAG37640680.7918851749371397No Hit
CCTTCTAGAA11066630.23281992337849897No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)