FastQCFastQC Report
Wed 11 May 2022
EGAF00005285866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005285866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424109594
Sequences flagged as poor quality0
Sequence length10
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATTGAGGCA42068797599.19322291963996No Hit
TATTGAGGAA13164320.3103990144585128No Hit
TATTTAGGCA5237750.12349991780662242No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)