FastQCFastQC Report
Sun 5 May 2024
EGAF00005285868

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005285868
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462552463
Total Bases4.6 Gbp
Sequences flagged as poor quality0
Sequence length10
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAATACGCG45842605399.10790443677737No Hit
TTAATAAGCG12829040.27735318750210614No Hit
TTAATACGCA12057820.26068005176744674No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)