FastQCFastQC Report
Mon 6 May 2024
EGAF00005285874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005285874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences317129178
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTCTGT8690287827.402990336007495No Hit
TAGCTCTA8213555725.899716171811853No Hit
GGAGAGAG7210455122.736649921250702No Hit
CCTAGACC6958644721.942618916005262No Hit
CCTAGACA4164890.1313310249869219No Hit
ATCTCTGA3406240.10740859675800629No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)