FastQCFastQC Report
Wed 11 May 2022
EGAF00005285879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005285879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences294836508
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA8305734028.17064296528705No Hit
GATGTGGT8184174227.75834734821917No Hit
AGGAGATG7040798423.88034795202499No Hit
CTACATCC5529809718.75551212267105No Hit
TCCTCAAA4980210.16891429198449195No Hit
CGGAGATG4718850.16004971813056476No Hit
CTACATCA4001830.13573047744819985No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)