FastQCFastQC Report
Tue 10 May 2022
EGAF00005286412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005286412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373250
Sequences flagged as poor quality0
Sequence length35-150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTAGGCATTCGACTCATCTCAGCATTAAAGTGATAAAAAAATAAATTA5960.1596784996651038No Hit
CTCCAGCAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAG5730.153516409912927No Hit
ACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAG4790.12833221701272604No Hit
GTCCAAAGGGGGTGAAAGGGTGCTCCCTTTATTCCCCCACCAAGACCACC4370.11707970529135968No Hit
GTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCA4350.11654387139986605No Hit
CCTCCCAGCAGCTCGGTCACCATCTCCAGCTGGTCGGCCGTGGAGAAGCT3960.10609511051574011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)