FastQCFastQC Report
Tue 10 May 2022
EGAF00005286641

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005286641
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences315460
Sequences flagged as poor quality0
Sequence length35-150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCAGCAGCCTCCCGCGACGATGCCCCTCAACGTTAGCTTCACCAACAG5410.17149559373613135No Hit
ATGTAGGCATTCGACTCATCTCAGCATTAAAGTGATAAAAAAATAAATTA4890.155011728903823No Hit
ACGTTAGCTTCACCAACAGGAACTATGACCTCGACTACGACTCGGTGCAG4770.15120776009636722No Hit
GTCCAAAGGGGGTGAAAGGGTGCTCCCTTTATTCCCCCACCAAGACCACC4700.148988778292018No Hit
GTGCAGCCGTATTTCTACTGCGACGAGGAGGAGAACTTCTACCAGCAGCA4390.13916185887275723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)