EGAF00005293627 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005293627
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19952557
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT	138212	0.6927031958861213	No Hit
CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGT	41355	0.2072666676256081	No Hit
CTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCA	39525	0.19809491084275566	No Hit
GTCCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAG	38782	0.1943710773511385	No Hit
CCCTGACTTTCTTCATTCTGTTCTTGCGTTCCTTTCGTTGCTTTCTTGAG	29924	0.1499757650109708	No Hit
CTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTC	27856	0.13961117865745226	No Hit
CCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGG	24132	0.12094690419879517	No Hit
CCCGCACTTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCG	22974	0.115143136791941	No Hit
CCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTCCATAGGGCTGGCAGGAGTC	22535	0.11294291754184689	No Hit
CTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGG	22295	0.11174006419327608	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	20356	0.1020220115146144	No Hit
CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA	19953	0.10000222026680591	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCATCCC	31120	49.424263	70
TACGCGG	370	44.757053	70
GCGCAAC	1580	44.465202	70
GCACTAC	25950	42.77199	25
CGGAACG	3980	41.435795	48
ATAATAC	27165	41.18948	17
CGAGGCG	26215	41.01828	54
GTCCCCG	26280	40.86056	49
CTCCCGT	11200	40.602726	1
ACTACAG	27540	40.49247	27
CCCCGAG	26520	40.435028	51
AGCACTA	27730	40.07566	24
CACTACA	27760	40.033554	26
TAATACA	27960	39.968307	18
GGCGTTT	27435	39.243584	57
GATTTAT	29690	38.922432	5
CCCAGAT	29730	38.777977	1
CTACAGA	28940	38.593452	28
AATAATA	29195	38.539715	16
ATACAGC	29100	38.247593	20