EGAF00005293635 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005293635
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16042172
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT	170191	1.0608974894422027	No Hit
GTCCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAG	48191	0.3004019655193823	No Hit
CTCTGCATCTTCATCTTGGTCACCACGCCAGAGAGGATCCGCCCTCGAAT	45767	0.2852917921588174	No Hit
CCCTGACTTTCTTCATTCTGTTCTTGCGTTCCTTTCGTTGCTTTCTTGAG	43719	0.27252544106870313	No Hit
CTCTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATTCGCTTCATC	35838	0.22339867693726262	No Hit
CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGT	35678	0.22240130575834743	No Hit
CTCCTCTTTGCTGATTCTGTGTTTGGCCCCAATGCAGCCTGTCCTGCGCT	27935	0.1741347742687212	No Hit
CTCCTCTTCTTCAGTCACTTCTTCAGTCACTTGGGTCTCCTCTGTCTGTTCCTCCACAATCACAGTTTCTTTCTC	26017	0.16217878726147555	No Hit
CTCCTTTCTCTCTCCTCCTCCTGCAGCTTGATGGAGATACCTCTTACTGGGCCTCTCTGAATTCGCTTCATC	25213	0.15716699708742682	No Hit
CTCCCCATAGATGGACTTGCCACCAGTGCCATTATGGCGTGTGAAGTCACCACCCTGACACATAAACCCTGGAAT	22603	0.14089737973137303	No Hit
CTCCTGGCTCAATACTGATGGAAGTAATCTGCTTAACAATCTCAGAAGGA	21695	0.13523729829102943	No Hit
CCCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAACTTCCATAGGGCTGGCAGGAGTC	18986	0.11835055751802188	No Hit
CTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCCCTTTC	18951	0.11813238257263418	No Hit
CTCATATCTCTTCTGGCTGTAGGGTGGCTCAGTGGAATCCATTTTGTTAA	17251	0.10753531379666045	No Hit
GTCCTTTTTAATTCTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAGCACTGCTGT	16908	0.10539719933186104	No Hit
CCTGACTTTCTTCATTCTGTTCTTGCGTTCCTTTCGTTGCTTTCTTGAGG	16453	0.10256092504182103	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCAAC	2050	61.317802	70
TCATCCC	32015	57.040867	70
TACGCGG	335	47.64804	70
CGCGCAA	2010	47.257416	69
GCACTAC	28610	47.228085	25
ACTACAG	29945	45.308926	27
ATAATAC	29960	45.305782	17
CGGAACG	2250	44.994293	48
AGCACTA	30155	44.841534	24
CACTACA	30260	44.65342	26
GTCCCCG	28930	44.58167	49
TAATACA	30430	44.571743	18
CGAGGCG	29375	44.18838	54
CCCCGAG	29530	43.70527	51
CTACAGA	31190	43.477913	28
AATAATA	31665	43.195965	16
GATTTAT	32685	42.962154	5
TATTGAA	32210	42.842484	9
CCCAGAT	33010	42.689693	1
ATACAGC	31715	42.634804	20