EGAF00005293641 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005293641
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17499026
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCA	33814	0.19323361197360356	No Hit
CCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGG	26780	0.15303708903569832	No Hit
CCCGCACTTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCG	24502	0.1400192216412502	No Hit
CTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGG	21574	0.1232868617944793	No Hit
CTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCT	20460	0.11692079319157536	No Hit
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT	20178	0.11530927492764455	No Hit
CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA	18934	0.10820030783427602	No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAA	18738	0.10708024549480641	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATAATAC	4785	36.04862	17
TAATACA	4960	34.49675	18
AATAATA	5290	32.73852	16
CGGAACG	5520	30.954313	48
TGTTACG	1830	29.593542	3
GATTTAT	6355	28.788298	5
GAAAATA	6110	28.344648	13
TACGACA	1085	27.82963	9
CGCTCGC	6295	27.612053	56
GATCGGA	1375	27.528894	1
GCACTAC	6280	27.08167	25
TATTGAA	6970	26.291723	9
GCGCGTT	730	25.911066	62
AGCACTA	6655	25.60737	24
ACTTTCG	11425	25.250256	6
ACCGCGA	3470	24.859331	46
CTCCCGT	8190	24.847271	1
TTCGTTC	11995	24.478682	9
ACTACAG	7175	24.284101	27
AAATAAT	7240	24.25639	15