EGAF00005293663 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005293663
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18841103
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT	75102	0.39860723652962354	No Hit
CTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCA	40836	0.21673890323724676	No Hit
CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGT	33959	0.1802389170103258	No Hit
CCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGG	31042	0.16475680855839492	No Hit
CCCGCACTTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCG	30140	0.15996940306520271	No Hit
CTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTC	24808	0.13166957369746346	No Hit
CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA	22057	0.11706851769771652	No Hit
CTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGG	21837	0.1159008578213282	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	21018	0.11155397855422795	No Hit
CTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAAC	20196	0.10719117665244969	No Hit
GTCCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAG	20185	0.10713279365863028	No Hit
GTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGT	19319	0.10253645978157434	No Hit
CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGT	18895	0.10028606074708048	No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG	18892	0.10027013811240244	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGTT	1670	42.46815	62
GCACTAC	15600	39.387184	25
ATAATAC	15935	38.643875	17
CGAGGCG	15820	37.588455	54
TAATACA	16480	37.36571	18
GTCCCCG	16170	36.88324	49
AGCACTA	16905	36.613262	24
ACTACAG	16910	36.603508	27
CCCCGAG	16325	36.378975	51
CGGAACG	4330	35.83478	48
AATAATA	17540	35.484177	16
CACTACA	17325	35.465893	26
TCATCCC	23975	35.449814	70
GATTTAT	18325	35.10951	5
GGCGTTT	16980	34.94703	57
TATTGAA	18200	34.825844	9
GGGCGCG	2155	34.501614	60
GCGCAAC	905	34.3718	70
GGCGCGT	2170	33.955986	61
CTACAGA	18160	33.796913	28