EGAF00005293677 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005293677
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18502591
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT	80956	0.4375387209283284	No Hit
CTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCA	48320	0.26115261370691273	No Hit
CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGT	41261	0.22300120021028405	No Hit
CCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGG	31517	0.17033830559190333	No Hit
CCCGCACTTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCG	29808	0.16110176136952928	No Hit
CTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGG	27086	0.1463903082546655	No Hit
CTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTC	22175	0.11984807965543852	No Hit
CTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAAC	21877	0.11823749441362023	No Hit
CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGT	21674	0.1171403507757373	No Hit
CCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGA	20477	0.11067098656615174	No Hit
CTCCCGTCCACTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCCAGCGCCATCCATTTTCAGGGCT	18517	0.10007787557969583	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACTAC	15300	42.65854	25
ATAATAC	15950	41.35252	17
TAATACA	16410	40.108467	18
CGAGGCG	16220	39.427322	54
AGCACTA	16630	39.371563	24
GCGCGTT	1235	39.321346	62
ACTACAG	16885	38.983208	27
TGTTACG	2925	38.95763	3
CGGAACG	5040	38.653038	48
CCCCGAG	16445	38.52393	51
GTCCCCG	16560	38.385864	49
CACTACA	17150	38.117546	26
AATAATA	17720	37.378746	16
GGCGTTT	17120	37.350174	57
GATTTAT	18150	37.305996	5
TATTGAA	18045	36.99375	9
TCATCCC	25060	36.124485	70
GAAAATA	18290	36.004578	13
CTACAGA	18350	35.681534	28
CGTTTTG	17925	35.565887	59