EGAF00005293705 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005293705
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25629527
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	416635	1.6256054979087207	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	172970	0.6748856504452851	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	163638	0.6384745219839602	No Hit
CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	63908	0.24935302161448394	No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG	60817	0.2372927132053588	No Hit
CTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55511	0.2165900291488017	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	31269	0.12200381224358921	No Hit
CCTGGATCGTGCGAGAGAAAGAAAACCATGGGACTCTTTTGCCAACTTGG	30681	0.11970958340354856	No Hit
CTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30481	0.11892923345795653	No Hit
CTCCTCTTCGGCAGCTCTCTTCAGCGCGGGCCCTTCATCATCCTCTTCTT	29516	0.11516404497047487	No Hit
CTCCTCTTCTTCAGTCACTTCTTCAGTCACTTGGGTCTTCTCTGTCTGTTCCTCCACAATCACAGTTTCTTTCTC	28848	0.11255767615219743	No Hit
CCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27227	0.10623293984317385	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTACGTA	1015	51.589172	20
TAACCGA	425	50.959682	60
TAAATCG	1315	50.431515	67
ACGTATG	595	50.370922	14
ACGCGAC	1010	49.490604	43
GACGTAA	1230	49.29367	21
CGCTATA	1310	46.547794	29
TAGCTAC	1305	45.40637	27
TACGTAA	1165	44.947056	21
CGTCTAA	1265	44.17911	43
TCCGTTA	815	43.96909	2
TATGCGA	855	43.91754	16
ACTATAA	655	43.697727	33
CTACGAA	905	42.958694	43
TATTGCG	730	42.94346	11
GCGTAAT	1340	42.9339	23
ACGTAAA	1425	42.82148	32
CGTATGG	630	42.350903	61
AATCGCG	540	41.21937	66
ATACGGT	1015	41.124287	34