EGAF00005293706 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005293706
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25629527
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	378206	1.475665157612936	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	338865	1.3221664215652515	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	247020	0.963810217800742	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	75275	0.29370421077220815	No Hit
CTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	63369	0.24724997851111336	No Hit
CTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	43941	0.17144678479630154	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	36766	0.1434517304981867	No Hit
CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	35390	0.13808292287251342	No Hit
CTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	31198	0.12172678801290401	No Hit
CACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	30980	0.12087620657220868	No Hit
CAAAGAGATAAATCAAATCTACTTTCGGATTAGCCCAGATGTAAGAGATGCCTTCCATGGTTTCCTCCCTTCCTT	30455	0.11882778796502955	No Hit
GAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAG	28494	0.11117645674849949	No Hit
GTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	26795	0.10454738396069503	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	25878	0.10096947946015547	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTATCGC	710	49.941086	70
CGTAACG	475	48.49147	16
CGAACTA	1090	47.62421	14
TGCGATA	680	46.41959	45
CTAGTTA	730	46.149406	20
CGTTAAC	980	44.188244	51
GAACGTA	750	43.993286	5
TACGTAA	560	43.140766	53
ATTGCGT	630	42.458965	70
TATCCGA	715	42.005245	51
TAGTTAG	1155	41.351765	68
CTAGCTA	1025	40.91774	25
CGTAACA	1025	40.583775	28
AACGTAT	400	39.580017	34
CTACGTA	610	39.549408	52
TAGGTTC	1580	38.93606	3
TTGCGTG	1280	38.879578	70
CGGTATA	400	38.664165	3
TTATTGC	2250	38.043736	9
GTTTAGT	1705	37.944645	70