FastQCFastQC Report
Wed 8 May 2024
EGAF00005293711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005293711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11593494
Total Bases875.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACGTTCTTCTCGGCCTGTTTCCGTAGCCTCATGAGCTGTTTCTTCT256220.22100326269198917No Hit
CTCCTCTTCTTCAGTCACTTCTTCAGTCACTTGGGTCTCCTCTGTCTGTT229460.19792135140622838No Hit
CCACGTTCTTCTCGGCCTGTTTCCGTAGCCTCATGAGCTGTTTCTTCTTC206750.17833277871192238No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA206710.17829827660237715No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT188350.1624618083211153No Hit
CTTCCGGTAGTGGATCTTGGCTTTCTCTTTCCTCTTCTCCTCCAGGGTGG179150.1545263231257117No Hit
CTCCGGAGTCGCAGTGTCTTCGGCCGCCGGAAGGTGGGTGACGTGCGGAT154660.1334024065566429No Hit
CCCATCTCAGCAGCCTCCTTCTCAAATTTTTCAATGGTTCTTTTGTCGAT141410.1219735827697845No Hit
CTCCTCTTCTTCACCCCCTTCTTCCTCCTTGCCCTCCTCCTCTTTGGCCT140480.12117140872285784No Hit
CTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCCCTTTC121800.1050589235652341No Hit
CTCCATTTTCTGCAGGGTTATTCCCCTCCTTGCCAGCATCAGCTTTTCCC116380.10038388772185504No Hit
CTCTTCTTCAGTCACTTCTTCAGTCACTTGGGTCTCCTCTGTCTGTTCCT116210.1002372537562878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)