EGAF00005293711 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005293711
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11593494
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCACGTTCTTCTCGGCCTGTTTCCGTAGCCTCATGAGCTGTTTCTTCT	25581	0.22064961606915048	No Hit
CCACGTTCTTCTCGGCCTGTTTCCGTAGCCTCATGAGCTGTTTCTTCTTC	20656	0.17816889369158254	No Hit
CTCCTCTTCTTCAGTCACTTCTTCAGTCACTTGGGTCTCCTCTGTCTGTTCCTCCACAATCACAGTTTCTTTCTC	20407	0.1760211373723918	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19771	0.17053530195469976	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17850	0.15396566384560167	No Hit
CTTCCGGTAGTGGATCTTGGCTTTCTCTTTCCTCTTCTCCTCCAGGGTGGCTGTCACTGCCTGGTACTTCCAGCC	15466	0.1334024065566429	No Hit
CTCCGGAGTCGCAGTGTCTTCGGCCGCCGGAAGGTGGGTGACGTGCGGAT	15287	0.13185843715449372	No Hit
CTCCTCTTCTTCACCCCCTTCTTCCTCCTTGCCCTCCTCCTCTTTGGCCT	13916	0.12003283910786515	No Hit
CCCATCTCAGCAGCCTCCTTCTCAAATTTTTCAATGGTTCTTTTGTCGAT	13895	0.11985170303275268	No Hit
CTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCCCTTTC	12133	0.10465352377807761	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACGACA	890	37.872753	9
TTACGAC	940	37.70661	8
CGATTAG	630	32.549946	4
CGGAACG	1195	30.886332	48
CGACTTA	470	30.801962	67
TTTACGA	1230	29.098944	7
ACGACAC	1185	28.738005	10
AACGTTA	460	28.104548	59
TTAGCGA	660	28.046103	58
CGCAATA	615	27.72584	45
ACGTGCG	4165	27.7233	41
ATTTATA	4020	27.639729	59
TATGTGA	2175	27.273596	67
ACCGCAT	3800	27.255787	54
CCCGAAC	2825	27.19831	1
GACGTGC	4285	26.943195	40
TTATGTG	2275	26.715197	66
GTTAGCG	685	26.500486	57
GTGACGT	4410	26.490913	38
ACGTTAG	495	26.131525	60