EGAF00005293719 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005293719
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16986149
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCAGATTTATTGAAAATAATACAGCACTACAGAAAAAATTCAAACAGGT	65967	0.38835759653350505	No Hit
CTCCGACTTTCGTTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCA	35538	0.20921752187620632	No Hit
CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGT	31971	0.18821805931409172	No Hit
CCCGCACTTACTGGGAATTCCTCGTTCATGGGGAATAATTGCAATCCCCG	23400	0.1377593002392714	No Hit
CCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGG	22332	0.13147182448476108	No Hit
CTCCCTTTCGATCGGCCGAGGGCAACGGAGGCCATCGCCCGTCCCTTCGG	21414	0.12606742116768196	No Hit
CTGCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTC	19508	0.11484651406272252	No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA	18837	0.11089623669261349	No Hit
CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGT	18699	0.11008381005017677	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCACTAC	12805	42.7448	25
ATAATAC	13420	41.2495	17
AGCACTA	13765	39.81383	24
TAATACA	14035	39.36783	18
ACTACAG	14235	38.816544	27
CGAGGCG	13840	38.64005	54
CCCCGAG	13980	38.47777	51
CACTACA	14485	37.81105	26
TATTGAA	14950	37.795372	9
GATTTAT	15365	37.415627	5
AATAATA	15165	36.91538	16
TGTTACG	2010	36.65989	3
CTACAGA	15090	36.432957	28
GAAAATA	15490	36.051105	13
GGCGTTT	15035	35.57144	57
ATACAGC	15655	35.47262	20
GCGCGTT	830	35.336735	62
CCCAGAT	16770	35.0381	1
TACAGAA	15895	34.566055	29
CGTTTTG	15555	34.064407	59