FastQCFastQC Report
Mon 6 May 2024
EGAF00005295932

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005295932
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43153168
Total Bases4.3 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT919550.21308980142547124No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT755380.17504624457699142No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT634160.1469556070599498No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCG625170.14487233011490605No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA581060.13465060085507513No Hit
CGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCC509920.11816513679829949No Hit
GGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTC486420.11271941842137755No Hit
CCTGTATCCTAGGCTACACACTGAGGACTCTGTTCCTCCCCTTTCCGCCT459260.10642555837383713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)