FastQCFastQC Report
Wed 15 May 2024
EGAF00005295937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005295937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60379161
Total Bases6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT763100.12638466440432983No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT713070.11809869302423728No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA637410.10556787961992382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)