FastQCFastQC Report
Sun 5 May 2024
EGAF00005296000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005296000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51591030
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT615450.11929399354887854No Hit
CGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCC607530.11775884296165437No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT545670.10576838648113829No Hit
CGACCGTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACC535770.10384944824710807No Hit
CTACAAACCACAAAGACATTGGAACACTATACCTATTATTCGGCGCATGA527440.10223482648049477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)