FastQCFastQC Report
Thu 2 May 2024
EGAF00005296066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005296066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44757967
Total Bases4.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT782450.17481803854049047No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT718340.1604943316571997No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT636910.14230092264914534No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA533790.11926144902872822No Hit
CGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCC526240.1175745985066748No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCG496120.11084507033127756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)