FastQCFastQC Report
Thu 2 May 2024
EGAF00005296093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005296093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38130898
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT549270.14404853512760177No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT480580.12603427278319015No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA408450.10711785492174876No Hit
CGTAGACACACGAGCATATTTCACCTCCGCTACCATAATCATCGCTATCC395650.10376099718396352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)