FastQCFastQC Report
Tue 7 May 2024
EGAF00005296105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005296105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49055877
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT561000.11435938654200392No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA532350.10851910771058074No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT516610.10531052171384073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)