FastQCFastQC Report
Sat 28 May 2022
EGAF00005296658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005296658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47783271
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA830800.17386838167692623No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG783140.1638941796177997No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG514540.10768203792494659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)