FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005296814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005296814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41761676
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGGGG87250.010.25332138
AGCTTAG86900.09.97994245
GGCATAG87950.09.84107735
CATAGGG93850.09.26891337
GCATAGG95000.09.2042236
GTCACTC151450.08.6226778
ACCCGGC63700.08.5896465
GAGCTTA102500.08.48310644
TCACCCG70400.08.4752073
CGTAGGG40550.08.37024537
CGGCCCG71600.08.3018398
ATAGCTC64650.08.27423239
GGTCACT161650.08.1204857
TGGCATA108800.08.10055934
GGGAGGT191100.07.99993043
GGCGTAG43700.07.81951635
TAGGGGA157600.07.743956639
GCGTAGG44550.07.719775736
TAGCTCT70900.07.70263440
ATTTCTA246200.07.6815632
Produced by FastQC (version 0.11.5)