FastQCFastQC Report
Wed 11 May 2022
EGAF00005296955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005296955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49370718
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG1319180.267198868770756No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT635020.12862280025986256No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA500800.10143664509801133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)