FastQCFastQC Report
Thu 12 May 2022
EGAF00005297069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005297069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56290230
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTGGTTGTGCAGAGCCTCATGCATCACGGAGCATGAGAAGACGTTCCC846890.15045061993884196No Hit
CTTGTAGTTGTTCTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTC810950.14406585299082986No Hit
GTGGTCTTGTAGTTGTTCTCCGGCTGCCCATTGCTCTCCCACTCCACGGCG746290.13257895730751146No Hit
AGGGAGTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCG716660.12731516641520207No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTG706190.12545516335605664No Hit
CCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGTTCCACGACACCG691390.12282593267073168No Hit
CTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGATAGAA660150.11727612411603222No Hit
GGAGTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCGCT658940.11706116674243469No Hit
CTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTGGAGGG643750.11436265227553698No Hit
CCTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGG625620.1111418446860139No Hit
GCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTG621020.11032465136489938No Hit
GGGAGTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCGC615960.10942573871167341No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCCC613010.10890166908182823No Hit
CTTGGCATTATGCACCTCCACGCCGTCCACGTACCAGTTGAACTTGACCTC587790.1044213178734569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)