FastQCFastQC Report
Wed 11 May 2022
EGAF00005297129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005297129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50828470
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG861330.16945817963830112No Hit
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG759250.14937494675720123No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT754630.14846600733801352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)