EGAF00005297296 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005297296
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	45136303
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA	157296	0.3484911026053685	No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG	75529	0.1673353708211326	No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG	69749	0.15452971414163008	No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC	64113	0.14204309112334698	No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG	56656	0.12552202159755974	No Hit
TCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA	55014	0.12188415165504361	No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT	45681	0.10120678248725865	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTTGTCG	5370	19.438444	26
TGTCGTT	6310	16.61423	28
GCTAAGT	7025	15.69309	14
TATAGCT	7480	15.640871	7
GGGAGGT	35635	15.265861	3
GGAGGTC	34695	15.264282	4
GGCATAG	24100	15.167575	35
GTCACTC	34525	15.105767	8
ATAGGGG	24975	15.077298	38
TCGTTCC	6925	15.008644	30
AGCTTAG	24815	14.957105	45
ATATAGC	8235	14.644088	6
ACTCTCC	36605	14.615763	11
GGTCACT	36430	14.303376	7
TCACTCT	37155	14.120975	9
GAGCTTA	26495	14.0765915	44
CACCGAA	70495	13.918909	45
AGGGATC	28055	13.886194	2
AGGTCAC	38680	13.849498	6
TTGTCGT	7735	13.815007	27